PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00854.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 283aa    MW: 31118.7 Da    PI: 5.2775
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00854.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.91.3e-191358147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             +g+W++eEd+ll  +v+++G+++W++I++ ++ gR++k+c++rw + 
  Rsa1.0_00854.1_g00008.1 13 KGPWSPEEDDLLQSLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 58
                             79******************************.***********985 PP

2Myb_DNA-binding53.65.3e-1767109347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              ++++eEde +v+a++++G++ W+tI+r +  gRt++ +k++w++ 
  Rsa1.0_00854.1_g00008.1  67 SFSPEEDETIVRAHARFGNK-WATISRLLS-GRTDNAIKNHWNST 109
                              69******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.679863IPR017930Myb domain
SuperFamilySSF466893.59E-3110106IPR009057Homeodomain-like
SMARTSM007173.4E-171261IPR001005SANT/Myb domain
PfamPF002491.4E-191358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-261466IPR009057Homeodomain-like
CDDcd001673.11E-161557No hitNo description
SMARTSM007177.7E-1464112IPR001005SANT/Myb domain
PROSITE profilePS5129420.03265114IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2267113IPR009057Homeodomain-like
CDDcd001676.10E-1167110No hitNo description
PfamPF002494.6E-1467109IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSSSVRKNME RIKGPWSPEE DDLLQSLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS  60
PEVEHRSFSP EEDETIVRAH ARFGNKWATI SRLLSGRTDN AIKNHWNSTL KRKCSAVASD  120
GYDGNIGEEQ PSKRTASGGG GGVSTELCIS GAVNEMTASS SGEDPPTYLS LSLPWNNETE  180
TVRVNESTQL NEDTVIDNGY TAELFPVRKE EVEEEKEMSG FGGEFMTVVQ EMIRTEVRSY  240
MADLQRGNVG GGGGGSCVPQ GVMNLRVGFR EFVVNQIGIG KIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-41101141105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667421e-121KC966742.1 Brassica napus MYB transcription factor 73 (MYB73.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625230.11e-176PREDICTED: transcription factor MYB44-like
SwissprotQ9FDW12e-81MYB44_ARATH; Transcription factor MYB44
TrEMBLA0A0D3BJV11e-175A0A0D3BJV1_BRAOL; Uncharacterized protein
STRINGBra010593.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-150myb domain protein 73